Hits is a free database devoted to protein domains. It is also a collection of tools for the investigation of the relationships between protein sequences and motifs described on them. These motifs are defined by an heterogeneous collection of predictors, which currently includes regular expressions, generalized profiles and hidden Markov models.
|May 2011||New Web interface|
|Apr 2010||Add hmmer3 service.|
|Jun 2009||Add the CS-BLAST tool|
|Oct 2008||Update of the Jalview applet to release 2.4|
|Aug 2008||Add a text search to find sequence, motif or taxonomy matches.|
|Jul 2008||Add mkdom2 and hmmer services.|
|Jan 2008||A link to RAxML (phylogenetic tree) was added from the MSA hub.|
Profile Align was added to align a set of proteins onto an existent
Multiple Sequence Alignment without having to realign the whole
See Profile Align to use it, or from hubs.
A new tool to reformat your sequences and your multiple sequence alignments.
See Reformat to use it, or from hubs.
MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res. 2007 Jul; 35(Web Server issue):W433-7. [RIS]
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