user: username=GUEST



query triangle

Database of sequences
sw pep ____C Swiss-Prot details
bact pep ____C Some complete proteomes from Bacteria details
arch pep ____C Some complete proteomes from Archaea details
euk pep ____C Some complete proteomes from Eukaryota details
ur50 pep ____C UniRef50 details
ur50_win20 pep ____C UniRef50 window shuffled (w=20) details
ecoli pep ____C Escherichia coli K12 proteome details

Database of motifs
perox prf ____C PeroxiBase profiles details
hamap prf ____Ca HAMAP profiles details
pat pat ____C PROSITE patterns details
freq_pat pat ____C PROSITE patterns (frequent match producers) details
prf prf ____C PROSITE profiles details
pre prf ____C More profiles details
ipat ipr ____C The PROSITE patterns from InterPro details
iprf ipr ____C The PROSITE profiles from InterPro details
ipfam ipr ____C The PFAM motifs from InterPro details
ismart ipr ____C The SMART motifs from InterPro details
ihamap ipr ____C The HAMAP profiles from InterPro details
pfam_fs pfam ____Ca Pfam HMMs (local models) details
pfam_ls pfam ____Ca Pfam HMMs (global models) details

Database of classifications
mnx_mnxref mnxref ____C A few special identifier for MNXRef details
taxid tree ____C The NCBI Taxonomy details
bigg_mnet metnet ____C Metabolic networks from BiGG details
seed_mnet metnet ____C Metabolic networks from SEED details
maranas_mnet metnet ____C Metabolic networks from Maranas lab details
yeastnet_mnet metnet ____C Metabolic networks from YeastNet details
p2m_mnet metnet ____C Metabolic networks from Path2Models details
iso_mnet metnet ____C Metabolic networks from InSilicoOrganism details
go_mnxref mnxref ____C The MNXRef namespace from Gene Ontology details
cco_mnxref mnxref ____C The MNXRef namespace from Cell Component Ontology details
rhea_mnxref mnxref ____C The MNXRef namespace from RHEA details
chebi_mnxref mnxref ____C The MNXRef namespace from ChEBI details
kegg_mnxref mnxref ____C The MNXRef namespace from KEGG details
metacyc_mnxref mnxref ____C The MNXRef namespace from MetaCyc details
upa_mnxref mnxref ____C The MNXRef namespace from UniPathways details
bigg_mnxref mnxref ____C The MNXRef namespace from BiGG details
seed_mnxref mnxref ____C The MNXRef namespace from SEED details
biopath_mnxref mnxref ____C The MNXRef namespace from BioPath details
lipidmaps_mnxref mnxref ____C The MNXRef namespace from LIPID MAPS details
hmdb_mnxref mnxref ____C The MNXRef namespace from HMDB details
reactome_mnxref mnxref ____C The MNXRef namespace from Reactome details
umbbd_mnxref mnxref ____C The MNXRef namespace from UMBBD details

List of hit (sequences vs motifs)
peroxhamappatfreq_patprfpreipatiprfipfamismartihamappfam_fspfam_ls
sw currentcurrentcurrentcurrentcurrent
bact currentcurrentcurrentcurrentcurrent
arch currentcurrentcurrentcurrentcurrent
euk currentcurrentcurrentcurrentcurrent
ur50
ur50_win20
ecoli currentcurrentcurrentcurrentcurrentcurrentcurrentcurrent

List of hat (sequences vs classifications)
mnx_mnxreftaxidbigg_mnetseed_mnetmaranas_mnetyeastnet_mnetp2m_mnetiso_mnetgo_mnxrefcco_mnxrefrhea_mnxrefchebi_mnxrefkegg_mnxrefmetacyc_mnxrefupa_mnxrefbigg_mnxrefseed_mnxrefbiopath_mnxreflipidmaps_mnxrefhmdb_mnxrefreactome_mnxrefumbbd_mnxref
sw current
bact current
arch current
euk current
ur50
ur50_win20
ecoli current

List of hot (motifs vs classifications)
mnx_mnxreftaxidbigg_mnetseed_mnetmaranas_mnetyeastnet_mnetp2m_mnetiso_mnetgo_mnxrefcco_mnxrefrhea_mnxrefchebi_mnxrefkegg_mnxrefmetacyc_mnxrefupa_mnxrefbigg_mnxrefseed_mnxrefbiopath_mnxreflipidmaps_mnxrefhmdb_mnxrefreactome_mnxrefumbbd_mnxref
perox
hamap
pat
freq_pat
prf
pre
ipat
iprf
ipfam
ismart
ihamap
pfam_fs
pfam_ls