TY  - JOUR
A1  - Pagni, Marco
A1  - Ioannidis, Vassilios
A1  - Cerutti, Lorenzo
A1  - Zahn-Zabal, Monique
A1  - Jongeneel, C. Victor
A1  - Falquet, Laurent
T1  - MyHits: a new interactive resource for protein annotation and domain identification
Y1  - 2004/7/1
JF  - Nucleic Acids Research
JO  - Nucl. Acids Res.
SP  - W332
EP  - 335
VL  - 32
IS  - suppl_2
UR  - http://nar.oxfordjournals.org/cgi/content/abstract/32/suppl_2/W332
N2  - The MyHits web server (http://myhits.isb-sib.ch) is a new integrated service dedicated to the annotation of protein sequences and to the analysis of their domains and signatures. Guest users can use the system anonymously, with full access to (i) standard bioinformatics programs (e.g. PSI-BLAST, ClustalW, T-Coffee, Jalview); (ii) a large number of protein sequence databases, including standard (Swiss-Prot, TrEMBL) and locally developed databases (splice variants); (iii) databases of protein motifs (Prosite, Interpro); (iv) a precomputed list of matches ( hits') between the sequence and motif databases. All databases are updated on a weekly basis and the hit list is kept up to date incrementally. The MyHits server also includes a new collection of tools to generate graphical representations of pairwise and multiple sequence alignments including their annotated features. Free registration enables users to upload their own sequences and motifs to private databases. These are then made available through the same web interface and the same set of analytical tools. Registered users can manage their own sequences and annotations using only web tools and freeze their data in their private database for publication purposes.

N1  - 10.1093/nar/gkh479
ER  -