The name of a user with an account. The corresponding password. A string returned by the connect action. A non-empty list of sequence types. A non-empty list of motif types. A non-empty list of classification types. A non-empty list of sequence database names. A non-empty list of motif database names. A non-empty list of classification database names. A non-empty list of sequence names or query identifiers that can return sequences. A non-empty list of motif entry names or query identifiers that can return motifs. A non-empty list of classification entry names or query identifiers that can return classification entries. A non-empty list of query identifiers that can return list of hits. A non-empty list of query identifiers that can return list of hats. A non-empty list of query identifiers that can return list of hots. A non-empty list of strings. A positive integer number. A positive real number. A list of 'signif'. Refer to mom_query documentation for the complete syntax. A simple string A list of warning messages. The version number is the one in production (if any). Overview of the sequence databases The version number is the one in production (if any). Overview of the motif databases The version number is the one in production (if any). Overview of the classification databases The version numbers are the one in production (if any). Overview of the hit lists. The version numbers are the one in production (if any). Overview of the hat lists The version numbers are the one in production (if any). Overview of the 'hot' lists. A list of strings. The last status change is refered by time_stamp. The number of entries is in count. How length is measured depends on the database type. Info about the different versions in the pipeline. Overview of the pipeline. Overview of the pipeline. frequency of occurences of the different signif. Info about the computed hit list. Info about the computed hat list. Info about the computed hot list. A list of sequence names. A list of motif names. A list of classification names. A name and the corresponding entry. A list of seq_name/text pairs. A list of mot_name/text pairs. A list of cla_name/text pairs. A list of seq_name/text pairs. A list of seq_name/text pairs. A list of seq_name/text pairs. A list of child/parents pairs score is set in conjunction with the desc_text=... constraint. The returned list is not sorted. score is only set in conjunction with the desc_text=... constraint. The returned list is not sorted! score is only set in conjunction with the desc_text=... constraint. The returned list is not sorted! A single hit. A list of hits. A single hat. A list of hats. A single hot. A list of hots. A query identifier starts with "$" followed by a letter. A list of query identifiers: A query identifier is a string that starts with "$" followed by a letter, and possibly more letter, digit or underscore. An overview of a single query. An overview of the internal query stack. This is just a place holder! A single SELECT statement. A List if SQL statements. What is behind a query. Internal stuff. These are the different number of rows returned given a context Counts for a single query. Counts for many queries Some default values The name of a user with an account. The corresponding password. A string returned by the connect action. A list of warning messages. A string returned by the connect action. A list of warning messages. A string returned by the connect action. A non-empty list of sequence types. Overview of the sequence databases A list of warning messages. A string returned by the connect action. A non-empty list of motif types. Overview of the motif databases A list of warning messages. A string returned by the connect action. A non-empty list of classification types. Overview of the classification databases A list of warning messages. A string returned by the connect action. A non-empty list of sequence types. A non-empty list of motif types. Overview of the hit lists. A list of warning messages. A string returned by the connect action. Overview of the hat lists A list of warning messages. A string returned by the connect action. Overview of the 'hot' lists. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. Overview of the pipeline. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. Overview of the pipeline. A list of warning messages. A string returned by the connect action. A non-empty list of classification database names. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. A non-empty list of motif database names. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. A non-empty list of classification database names. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. A non-empty list of classification database names. A list of warning messages. A string returned by the connect action. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A query identifier This is just a place holder! A list of warning messages. A string returned by the connect action. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A query identifier This is just a place holder! A list of warning messages. A string returned by the connect action. A list of classification entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A query identifier This is just a place holder! A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of sequence entry names to be included in the results (logical AND with the previous constraint). A list of sequence entry names to be excluded from the results (logical NOT to restrict the two previous constraints). A list of words to search for. A positive real number. Limit the search to the sequence with the given property key(s). Limit the search to entries with the supplied property value(s). The exhaustive list of all entries matching the criteria is returned. This is a major distinction from the built-in synonymy mechanism that returns at most one sequence. Maximum number of rows to be returned. A query identifier, i.e. a string that starts with "$" followed by a letter, possibly followed by more letters, digits or underscores. This is how a query can be saved to be re-used later in other operations. When supplied, this option prevents the query to be executed. The returned list is not sorted. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of motif entry names to be included in the results (logical AND with the previous constraint). A list of motif entry names to be excluded from the results (logical NOT to restrict the two previous constraints). A list of words to search for. A positive real number. Limit the search to the sequence with the given property key(s). Limit the search to entries with the supplied property value(s). The exhaustive list of all entries matching the criteria is returned. This is a major distinction from the built-in synonymy mechanism that returns at most one sequence. Maximum number of rows to be returned. A query identifier, i.e. a string that starts with "$" followed by a letter, possibly followed by more letters, digits or underscores. This is how a query can be saved to be re-used later in other operations. When supplied, this option prevents the query to be executed. The returned list is not sorted! A list of warning messages. A string returned by the connect action. A non-empty list of classification database names. A list of classification entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of classification entry names to be included in the results (logical AND with the previous constraint). A list of classification entry names to be excluded from the results (logical NOT to restrict the two previous constraints). A list of words to search for. A positive real number. Limit the search to the sequence with the given property key(s). Limit the search to entries with the supplied property value(s). The exhaustive list of all entries matching the criteria is returned. This is a major distinction from the built-in synonymy mechanism that returns at most one sequence. A non-empty list of classification entry names or query identifiers that can return classification entries. A non-empty list of classification entry names or query identifiers that can return classification entries. A non-empty list of classification entry names or query identifiers that can return classification entries. A non-empty list of classification entry names or query identifiers that can return classification entries. Maximum number of rows to be returned. A query identifier, i.e. a string that starts with "$" followed by a letter, possibly followed by more letters, digits or underscores. This is how a query can be saved to be re-used later in other operations. When supplied, this option prevents the query to be executed. The returned list is not sorted! A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of sequence entry names to be included in the results (logical AND with the previous constraint). A list of sequence entry names to be excluded from the results (logical NOT to restrict the two previous constraints). A non-empty list of motif database names. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of motif entry names to be included in the results (logical AND with the previous constraint). A list of motif entry names to be excluded from the results (logical NOT to restrict the two previous constraints). A hit list given using query identifiers to be included in the results. A hit list to be included in the results (logical AND with the previous constraint). A hit list to be excluded from the results (logical NOT to restrict the two previous constraints). A list of hit signif to be included in the results. A list of hit signif to be excluded from the results. Maximum number of rows to be returned. A query identifier, i.e. a string that starts with "$" followed by a letter, possibly followed by more letters, digits or underscores. This is how a query can be saved to be re-used later in other operations. When supplied, this option prevents the query to be executed. A list of hits. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of sequence entry names to be included in the results (logical AND with the previous constraint). A list of sequence entry names to be excluded from the results (logical NOT to restrict the two previous constraints). A non-empty list of classification database names. A list of classification entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of classification entry names to be included in the results (logical AND with the previous constraint). A list of classification entry names to be excluded from the results (logical NOT to restrict the two previous constraints). A hat list given using query identifiers to be included in the results. Maximum number of rows to be returned. A query identifier, i.e. a string that starts with "$" followed by a letter, possibly followed by more letters, digits or underscores. This is how a query can be saved to be re-used later in other operations. When supplied, this option prevents the query to be executed. A list of hats. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of motif entry names to be included in the results (logical AND with the previous constraint). A list of motif entry names to be excluded from the results (logical NOT to restrict the two previous constraints). A non-empty list of classification database names. A list of classification entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of classification entry names to be included in the results (logical AND with the previous constraint). A list of classification entry names to be excluded from the results (logical NOT to restrict the two previous constraints). A hot list given using query identifiers to be included in the results. Maximum number of rows to be returned. A query identifier, i.e. a string that starts with "$" followed by a letter, possibly followed by more letters, digits or underscores. This is how a query can be saved to be re-used later in other operations. When supplied, this option prevents the query to be executed. A list of hots. A list of warning messages. A string returned by the connect action. Refer to the mom_query documentation for the complete syntax. A non-empty list of sequence database names. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. A list of sequence entry names to be excluded from the results (logical NOT to restrict the two previous constraints). Scope of the ? operator: Scope of the ? operator: A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Scope of the ? operator: A list of motif entry names to be excluded from the results (logical NOT to restrict the two previous constraints). Scope of the ? operator: A list of hit signif to be included in the results. Scope of the ? operator: A list of hit signif to be excluded from the results. Maximum number of rows to be returned. A query identifier, i.e. a string that starts with "$" followed by a letter, possibly followed by more letters, digits or underscores. This is how a query can be saved to be re-used later in other operations. When supplied, this option prevents the query to be executed. A list of hits. A list of warning messages. A string returned by the connect action. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of sequence names. A list of warning messages. A string returned by the connect action. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of motif names. A list of warning messages. A string returned by the connect action. A list of classification entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of classification names. A list of warning messages. A string returned by the connect action. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of mot_name/text pairs. A list of warning messages. A string returned by the connect action. A list of classification entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of cla_name/text pairs. A list of warning messages. A string returned by the connect action. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of mot_name/text pairs. A list of warning messages. A string returned by the connect action. A list of classification entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of cla_name/text pairs. A list of warning messages. A string returned by the connect action. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A list of classification entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of mot_name/text pairs. A list of warning messages. A string returned by the connect action. A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of strings. A list of warning messages. A string returned by the connect action. A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results. Maximum number of rows to be returned. A list of strings. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. Maximum number of rows to be returned. A list of sequence names. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. Maximum number of rows to be returned. A list of motif names. A list of warning messages. A string returned by the connect action. A non-empty list of classification database names. Maximum number of rows to be returned. A list of classification names. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. Maximum number of rows to be returned. A list of mot_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of classification database names. Maximum number of rows to be returned. A list of cla_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. Maximum number of rows to be returned. A list of mot_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of classification database names. Maximum number of rows to be returned. A list of cla_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of classification database names. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. Maximum number of rows to be returned. A list of seq_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. Maximum number of rows to be returned. A list of mot_name/text pairs. A list of warning messages. A string returned by the connect action. A non-empty list of sequence database names. Maximum number of rows to be returned. A list of strings. A list of warning messages. A string returned by the connect action. A non-empty list of motif database names. Maximum number of rows to be returned. A list of strings. A list of warning messages. A string returned by the connect action. A hit list given using query identifiers to be included in the results. A list of matches by a metamotif expression given using query identifiers. Maximum number of rows to be returned. A list of hits. A list of warning messages. A string returned by the connect action. A hat list given using query identifiers to be included in the results. Maximum number of rows to be returned. A list of hats. A list of warning messages. A string returned by the connect action. A hot list given using query identifiers to be included in the results. Maximum number of rows to be returned. A list of hots. A list of warning messages. A string returned by the connect action. An overview of the internal query stack. A list of warning messages. A string returned by the connect action. A list of query identifiers: A query identifier is a string that starts with "$" followed by a letter, and possibly more letter, digit or underscore. Internal stuff. A list of warning messages. A string returned by the connect action. A list of query identifiers: A query identifier is a string that starts with "$" followed by a letter, and possibly more letter, digit or underscore. A list of warning messages. A string returned by the connect action. This is just a place holder! A list of warning messages. A string returned by the connect action. A list of warning messages. A string returned by the connect action. Maximum number of rows to be returned. Default timeout in seconds Either cli or xml - this option is irrelevant for the SOAP service. This is just a place holder! A list of warning messages. A string returned by the connect action. A sticky comment A list of warning messages. Return the session_id string to be used in other methods. Do not set username and password to login anonymously. Terminate the current session. Summary information about all sequence databases. Summary information about all motif databases. Summary information about all classification databases. Summary information about all computed hit lists (sequence vs motif) Summary information about all 'hat' lists (sequence vs classification) Summary information about all 'hot' lists (motif vs classification) Miscellaneous information about sequence databases. Miscellaneous information about motif databases. Miscellaneous information about classification databases. Miscellaneous information about hit lists (sequence vs motif). Miscellaneous information about 'hat' lists (sequence vs classification). Miscellaneous information about 'hat' lists (motif vs classification). Internal routine not (yet) really useful. Internal routine no (yet) really useful Internal routine not (yet) really useful. For querying the sequences. Refer to http://http://myhits.isb-sib.ch/hk/seq_query.html for details. For querying the motifs. Refer to http://http://myhits.isb-sib.ch/hk/mom_query.html for details. For querying the classifications. Refer to http://http://myhits.isb-sib.ch/hk/cla_query.html for details. For querying the hit lists (sequence vs motif). Refer to http://http://myhits.isb-sib.ch/hk/hit_query.html for details. For querying the 'hat' lists (sequence vs classification). Refer to http://http://myhits.isb-sib.ch/hk/hat_query.html for details. For querying the 'hot' lists (motif vs classification). Refer to http://http://myhits.isb-sib.ch/hk/hot_query.html for details. Advanced query of the list of hits. Refer to http://http://myhits.isb-sib.ch/hk/mom_query.html for details. Return the non-redundant list of sequence names. Return the non-redundant list of motif names. Return the non-redundant list of classification names. Return the descriptive text attached to every sequence. This text can be search for using the desc_text constraint of the seq_query() method. Return the descriptive text attached to every motif. This text can be search for using the desc_text constraint of the mot_query() method. Return the descriptive text attached to every classification. This text can be search for using the desc_text constraint of the cla_query() method.. Return the non-redundant list of entry text. Return the non-redundant list of entry text. Return the non-redundant list of entry text. Return the non-redundant list of synonyms and property. Return the non-redundant list of synonyms and property. Return the non-redundant list of synonyms and property. Return the entry in FASTA format. Return the entry in FASTA format. Return the entry in FASTA format (non redundant). Return the entry in FASTA format (non redundant). Return the non-redundant list of sequence names. Return the non-redundant list of motif names. Return the non-redundant list of classification names. Return the descriptive text attached to every sequence. This text can be search for using the desc_text constraint of the seq_query() method. Return the descriptive text attached to every motif. This text can be search for using the desc_text constraint of the mot_query() method. Return the descriptive text attached to every classification. This text can be search for using the desc_text constraint of the cla_query() method.. Return the non-redundant list of entry text. Return the non-redundant list of entry text. Return the non-redundant list of entry text. Return the non-redundant list of synonyms and property. Return the non-redundant list of synonyms and property. Return the non-redundant list of synonyms and property. Return the entry in FASTA format. Return the entry in FASTA format. Return the entry in FASTA format (non redundant). Return the entry in FASTA format (non redundant). Retrieval of hit lists (sequence vs motif). Retrieval of 'hat' lists (sequence vs classification). Retrieval of 'hot' lists (motif vs classification). Return summary information about the query stack Return the details about the SQL statements: debugging! Provides number(s) of rows for the different supported context(s) Reset the query stack Return a few default settings Alter a few default settings Prepare a comment to be attached to the next query