17 Metamotif II: overlapping motifs


The match by the prosite pattern pat:THIOREDOXIN_1 (active site) and by the Swiss-Prot annotation ft:DOMAIN_Thioredoxin (globular domain) are usually associated, but not always. Try to sort these matches by producing sequence and hit counts for the different configurations.

Hint: Compare the results of a mom_query with the report ’()’ and include ’/>/’ operators, with those produced a few “simple” hit_query