TY - JOUR A1 - Junier, Thomas A1 - Pagni, Marco A1 - Bucher, Philipp T1 - mmsearch: a motif arrangement language and search program Y1 - 2001/12/1 JF - Bioinformatics JO - Bioinformatics SP - 1234 EP - 1235 VL - 17 IS - 12 UR - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/17/12/1234 N2 - Summary: This paper presents a language for describing arrangements of motifs in biological sequences, and a program that uses the language to find the arrangements in motif match databases. The program does not by itself search for the constituent motifs, and is thus independent of how they are detected, which allows it to use motif match data of various origins. Availability: The program can be tested online at http://hits.isb-sib.ch and the distribution is available from https://ftp.vital-it.ch/pub/software/unix/mmsearch-1.0.tar.gz Contact: Thomas.Junier@sib.swiss Supplementary information: The full documentation about mmsearch is available from http://hits.isb-sib.ch/~tjunier/mmsearch/doc. N1 - 10.1093/bioinformatics/17.12.1234 ER -