ExPASy_SIB
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mom_query
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ESTScan
Advanced query of the list of hits. Refer to
mom_query help
for details.
metamotif
Refer to the mom_query documentation for the complete syntax.
seq_source
A non-empty list of sequence database names.
sw
- Swiss-Prot
bact
- Some complete proteomes from Bacteria
arch
- Some complete proteomes from Archaea
euk
- Some complete proteomes from Eukayota
sw_var
- Swiss-Prot splice variants
ur50
- UniRef50
ur50_win20
- UniRef50 window shuffled (w=20)
ecoli
- Escherichia coli K12 proteome
seq_name
A list of sequence entry names (given explicitly, or implicitly using query identifiers) to be included in the results.
hide
|
text input
not_seq_name
A list of sequence entry names to be excluded from the results (logical NOT to restrict the two previous constraints).
hide
|
text input
mot_source
Scope of the ? operator:
perox
- PeroxiBase profiles
hamap
- HAMAP profiles
pat
- PROSITE patterns
freq_pat
- PROSITE patterns (frequent match producers)
prf
- PROSITE profiles
pre
- More profiles
ipat
- The PROSITE patterns from InterPro
iprf
- The PROSITE profiles from InterPro
ipfam
- The PFAM motifs from InterPro
ismart
- The SMART motifs from InterPro
ihamap
- The HAMAP profiles from InterPro
pfam_fs
- Pfam HMMs (local models)
pfam_ls
- Pfam HMMs (global models)
mot_name
Scope of the ? operator: A list of motif entry names (given explicitly, or implicitly using query identifiers) to be included in the results.
hide
|
text input
not_mot_name
Scope of the ? operator: A list of motif entry names to be excluded from the results (logical NOT to restrict the two previous constraints).
hide
|
text input
signif
Scope of the ? operator: A list of hit signif to be included in the results.
hide
|
text input
not_signif
Scope of the ? operator: A list of hit signif to be excluded from the results.
hide
|
text input
-lim
Maximum number of rows to be returned.
hide
|
text input