user: username=GUEST



For querying the 'hot' lists (motif vs classification). Refer to hot_query help for details.

mot_source perox - PeroxiBase profiles
hamap - HAMAP profiles
pat - PROSITE patterns
freq_pat - PROSITE patterns (frequent match producers)
prf - PROSITE profiles
pre - More profiles
ipat - The PROSITE patterns from InterPro
iprf - The PROSITE profiles from InterPro
ipfam - The PFAM motifs from InterPro
ismart - The SMART motifs from InterPro
ihamap - The HAMAP profiles from InterPro
pfam_fs - Pfam HMMs (local models)
pfam_ls - Pfam HMMs (global models)

mot_name hide | text input
and_mot_name hide | text input
not_mot_name hide | text input
cla_source mnx_mnxref - A few special identifier for MNXRef
taxid - The NCBI Taxonomy
bigg_mnet - Metabolic networks from BiGG
seed_mnet - Metabolic networks from SEED
maranas_mnet - Metabolic networks from Maranas lab
yeastnet_mnet - Metabolic networks from YeastNet
p2m_mnet - Metabolic networks from Path2Models
iso_mnet - Metabolic networks from InSilicoOrganism
go_mnxref - The MNXRef namespace from Gene Ontology
cco_mnxref - The MNXRef namespace from Cell Component Ontology
rhea_mnxref - The MNXRef namespace from RHEA
chebi_mnxref - The MNXRef namespace from ChEBI
kegg_mnxref - The MNXRef namespace from KEGG
metacyc_mnxref - The MNXRef namespace from MetaCyc
upa_mnxref - The MNXRef namespace from UniPathways
bigg_mnxref - The MNXRef namespace from BiGG
seed_mnxref - The MNXRef namespace from SEED
biopath_mnxref - The MNXRef namespace from BioPath
lipidmaps_mnxref - The MNXRef namespace from LIPID MAPS
hmdb_mnxref - The MNXRef namespace from HMDB
reactome_mnxref - The MNXRef namespace from Reactome
umbbd_mnxref - The MNXRef namespace from UMBBD
cla_name hide | text input
and_cla_name hide | text input
not_cla_name hide | text input
hot_name not available
-lim hide | text input