user: username=GUEST

For querying the hit lists (sequence vs motif). Refer to hit_query help for details.

seq_source sw - Swiss-Prot
bact - Some complete proteomes from Bacteria
arch - Some complete proteomes from Archaea
euk - Some complete proteomes from Eukaryota
ur50 - UniRef50
ur50_win20 - UniRef50 window shuffled (w=20)
ecoli - Escherichia coli K12 proteome

seq_name hide | text input
and_seq_name hide | text input
not_seq_name hide | text input
mot_source perox - PeroxiBase profiles
hamap - HAMAP profiles
pat - PROSITE patterns
freq_pat - PROSITE patterns (frequent match producers)
prf - PROSITE profiles
pre - More profiles
ipat - The PROSITE patterns from InterPro
iprf - The PROSITE profiles from InterPro
ipfam - The PFAM motifs from InterPro
ismart - The SMART motifs from InterPro
ihamap - The HAMAP profiles from InterPro
pfam_fs - Pfam HMMs (local models)
pfam_ls - Pfam HMMs (global models)
mot_name hide | text input
and_mot_name hide | text input
not_mot_name hide | text input
hit_name not available
and_hit_name not available
not_hit_name not available
signif hide | text input
not_signif hide | text input
-lim hide | text input