Sequence Input



Mandatory parameters
seq_source sw - Swiss-Prot
bact - Some complete proteomes from Bacteria
arch - Some complete proteomes from Archaea
euk - Some complete proteomes from Eukayota
sw_var - Swiss-Prot splice variants
ur50 - UniRef50
ur50_win20 - UniRef50 window shuffled (w=20)
ecoli - Escherichia coli K12 proteome

Biegert, A. and Söding, J.
Sequence context-specific profiles for homology searching.
PNAS 2009 Mar; 106(10):3770-3775.